Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-07-29_ENC/_hg38_canonical/StS_5 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  41,144,328
 Normal Paired: 25,465,152 (61.89%)
 Chimeric Paired: 12,344,912 (30.00%)
 Chimeric Ambiguous: 2,287,096 (5.56%)
 Unmapped: 1,047,168 (2.55%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 37,810,064 (91.90%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-08-22T04:02:27,408]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 33,024,404 (80.26%)
PCR Duplicates: 4,655,092 (11.31%)
Optical Duplicates: 130,568 (0.32%)
Library Complexity Estimate: 139,656,667
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,003,126 (14.59% / 18.18%)
Hi-C Contacts: 27,021,278 (65.67% / 81.82%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 69%
 Cis/all (FF and RR orient): 83.0%
Inter-chromosomal: 1,422,472  (3.46% / 4.31%)
Intra-chromosomal: 25,598,806  (62.22% / 77.51%)
Short Range (<20,000bp): 21,468,923  (52.18% / 65.01%)
Long Range (>20,000bp): 4,129,883  (10.04% / 12.51%)