Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202412201534workoct/Juicer-Out/2024-11-13_ENC/Oncobox/StS_5 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  53,823,124
 Normal Paired: 36,744,390 (68.27%)
 Chimeric Paired: 14,831,807 (27.56%)
 Chimeric Ambiguous: 1,914,826 (3.56%)
 Unmapped: 332,101 (0.62%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 51,576,197 (95.83%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-11-21T16:50:26,480]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 28,723,641 (53.37%)
PCR Duplicates: 22,700,300 (42.18%)
Optical Duplicates: 152,256 (0.28%)
Library Complexity Estimate: 39,415,888
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,272,493 (6.08% / 11.39%)
Hi-C Contacts: 25,451,148 (47.29% / 88.61%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 75% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 80.3%
Inter-chromosomal: 1,930,466  (3.59% / 6.72%)
Intra-chromosomal: 23,520,682  (43.70% / 81.89%)
Short Range (<20,000bp): 19,075,636  (35.44% / 66.41%)
Long Range (>20,000bp): 4,445,046  (8.26% / 15.48%)