Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /data/nyt/Projects/Juicer-Out/2024-04-09_BGI/FFPE/Casian -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  292,070
 Normal Paired: 147,888 (50.63%)
 Chimeric Paired: 117,805 (40.33%)
 Chimeric Ambiguous: 25,543 (8.75%)
 Unmapped: 834 (0.29%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 265,693 (90.97%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-05-02T19:20:23,614]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 256,911 (87.96%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 8,782 (3.01%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 20,133 (6.89% / 7.84%)
Hi-C Contacts: 236,778 (81.07% / 92.16%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 55%
 Cis/all (FF and RR orient): 73.2%
Inter-chromosomal: 28,410  (9.73% / 11.06%)
Intra-chromosomal: 208,368  (71.34% / 81.11%)
Short Range (<20,000bp): 163,794  (56.08% / 63.76%)
Long Range (>20,000bp): 44,574  (15.26% / 17.35%)