Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /data/nyt/Projects/Juicer-Out/2024-04-09_BGI/FFPE/F1613_19 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  224,472
 Normal Paired: 128,414 (57.21%)
 Chimeric Paired: 79,257 (35.31%)
 Chimeric Ambiguous: 15,993 (7.12%)
 Unmapped: 808 (0.36%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 207,671 (92.52%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-05-02T19:22:26,598]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 200,444 (89.30%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 7,227 (3.22%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 25,014 (11.14% / 12.48%)
Hi-C Contacts: 175,430 (78.15% / 87.52%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 24% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 73.0%
Inter-chromosomal: 17,457  (7.78% / 8.71%)
Intra-chromosomal: 157,973  (70.38% / 78.81%)
Short Range (<20,000bp): 129,333  (57.62% / 64.52%)
Long Range (>20,000bp): 28,640  (12.76% / 14.29%)