Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /data/nyt/Projects/Juicer-Out/2024-04-09_BGI/FFPE/G1250_15 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  214,131
 Normal Paired: 118,735 (55.45%)
 Chimeric Paired: 74,862 (34.96%)
 Chimeric Ambiguous: 19,398 (9.06%)
 Unmapped: 1,136 (0.53%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 193,597 (90.41%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-05-02T19:24:21,436]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 186,468 (87.08%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 7,129 (3.33%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 15,152 (7.08% / 8.13%)
Hi-C Contacts: 171,316 (80.01% / 91.87%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 71.9%
Inter-chromosomal: 18,654  (8.71% / 10.00%)
Intra-chromosomal: 152,662  (71.29% / 81.87%)
Short Range (<20,000bp): 124,977  (58.36% / 67.02%)
Long Range (>20,000bp): 27,685  (12.93% / 14.85%)