Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /data/nyt/Projects/Juicer-Out/2024-04-09_BGI/FFPE/G1359_20 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  278,840
 Normal Paired: 158,102 (56.70%)
 Chimeric Paired: 96,985 (34.78%)
 Chimeric Ambiguous: 22,392 (8.03%)
 Unmapped: 1,361 (0.49%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 255,087 (91.48%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-05-02T19:26:06,885]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 248,013 (88.94%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 7,074 (2.54%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 20,094 (7.21% / 8.10%)
Hi-C Contacts: 227,919 (81.74% / 91.90%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 70.8%
Inter-chromosomal: 25,265  (9.06% / 10.19%)
Intra-chromosomal: 202,654  (72.68% / 81.71%)
Short Range (<20,000bp): 169,729  (60.87% / 68.44%)
Long Range (>20,000bp): 32,925  (11.81% / 13.28%)