Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 16 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g T2T -d /data/nyt/Projects/Juicer-Out/2024-04-09_BGI/FFPE/G278_20 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 16 Sequenced Read Pairs: 101,899 Normal Paired: 52,015 (51.05%) Chimeric Paired: 39,798 (39.06%) Chimeric Ambiguous: 9,749 (9.57%) Unmapped: 337 (0.33%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 91,813 (90.10%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2024-05-02T19:31:21,531] [Globals.java:138] [main] Development mode is enabled Unique Reads: 88,917 (87.26%) PCR Duplicates: 0 (0.00%) Optical Duplicates: 2,896 (2.84%) Library Complexity Estimate: 0 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 11,784 (11.56% / 13.25%) Hi-C Contacts: 77,133 (75.70% / 86.75%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 9% - 73% - 9% - 9% Pair Type inter chrom %(L-I-O-R): 26% - 24% - 25% - 25% DE: 57% Cis/all (FF and RR orient): 76.9% Inter-chromosomal: 7,497 (7.36% / 8.43%) Intra-chromosomal: 69,636 (68.34% / 78.32%) Short Range (<20,000bp): 54,952 (53.93% / 61.80%) Long Range (>20,000bp): 14,684 (14.41% / 16.51%)