Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/Casian -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22 Sequenced Read Pairs: 74,049,267 Normal Paired: 44,276,708 (59.79%) Chimeric Paired: 23,013,029 (31.08%) Chimeric Ambiguous: 6,594,815 (8.91%) Unmapped: 164,715 (0.22%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 67,289,737 (90.87%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2024-09-09T22:24:53,016] [Globals.java:138] [main] Development mode is enabled Unique Reads: 62,476,105 (84.37%) PCR Duplicates: 4,813,632 (6.50%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 447,613,390 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 4,845,368 (6.54% / 7.76%) Hi-C Contacts: 57,630,737 (77.83% / 92.24%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 64% Cis/all (FF and RR orient): 60.5% Inter-chromosomal: 8,176,000 (11.04% / 13.09%) Intra-chromosomal: 49,454,737 (66.79% / 79.16%) Short Range (<20,000bp): 42,263,132 (57.07% / 67.65%) Long Range (>20,000bp): 7,191,605 (9.71% / 11.51%)