Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/Casian -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  74,049,267
 Normal Paired: 44,276,708 (59.79%)
 Chimeric Paired: 23,013,029 (31.08%)
 Chimeric Ambiguous: 6,594,815 (8.91%)
 Unmapped: 164,715 (0.22%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 67,289,737 (90.87%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-09T22:24:53,016]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 62,476,105 (84.37%)
PCR Duplicates: 4,813,632 (6.50%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 447,613,390
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,790,263 (10.52% / 12.47%)
Hi-C Contacts: 54,685,842 (73.85% / 87.53%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 65%
 Cis/all (FF and RR orient): 61.4%
Inter-chromosomal: 7,330,971  (9.90% / 11.73%)
Intra-chromosomal: 47,354,871  (63.95% / 75.80%)
Short Range (<20,000bp): 40,692,093  (54.95% / 65.13%)
Long Range (>20,000bp): 6,662,778  (9.00% / 10.66%)