Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F1023_18 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  17,315,876
 Normal Paired: 10,367,683 (59.87%)
 Chimeric Paired: 4,886,413 (28.22%)
 Chimeric Ambiguous: 1,928,448 (11.14%)
 Unmapped: 133,332 (0.77%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 15,254,096 (88.09%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-04T20:08:01,709]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 14,033,994 (81.05%)
PCR Duplicates: 1,220,102 (7.05%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 90,200,196
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,441,901 (8.33% / 10.27%)
Hi-C Contacts: 12,592,093 (72.72% / 89.73%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 69%
 Cis/all (FF and RR orient): 53.2%
Inter-chromosomal: 1,852,355  (10.70% / 13.20%)
Intra-chromosomal: 10,739,738  (62.02% / 76.53%)
Short Range (<20,000bp): 9,529,630  (55.03% / 67.90%)
Long Range (>20,000bp): 1,210,108  (6.99% / 8.62%)