Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F1217_15 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  19,755,511
 Normal Paired: 11,619,344 (58.82%)
 Chimeric Paired: 5,909,108 (29.91%)
 Chimeric Ambiguous: 2,104,714 (10.65%)
 Unmapped: 122,345 (0.62%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 17,528,452 (88.73%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-05T22:34:18,114]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 16,021,614 (81.10%)
PCR Duplicates: 1,506,838 (7.63%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 96,020,179
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,582,007 (8.01% / 9.87%)
Hi-C Contacts: 14,439,607 (73.09% / 90.13%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 67%
 Cis/all (FF and RR orient): 61.5%
Inter-chromosomal: 1,821,535  (9.22% / 11.37%)
Intra-chromosomal: 12,618,072  (63.87% / 78.76%)
Short Range (<20,000bp): 11,115,872  (56.27% / 69.38%)
Long Range (>20,000bp): 1,502,200  (7.60% / 9.38%)