Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/F648_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  68,293,643
 Normal Paired: 31,745,090 (46.48%)
 Chimeric Paired: 26,076,626 (38.18%)
 Chimeric Ambiguous: 10,335,299 (15.13%)
 Unmapped: 136,628 (0.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 57,821,716 (84.67%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-04T04:14:06,684]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 56,103,185 (82.15%)
PCR Duplicates: 1,718,531 (2.52%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 953,364,174
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,565,092 (6.68% / 8.14%)
Hi-C Contacts: 51,538,093 (75.47% / 91.86%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 9% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 51%
 Cis/all (FF and RR orient): 63.9%
Inter-chromosomal: 9,179,130  (13.44% / 16.36%)
Intra-chromosomal: 42,358,963  (62.02% / 75.50%)
Short Range (<20,000bp): 32,137,980  (47.06% / 57.28%)
Long Range (>20,000bp): 10,220,983  (14.97% / 18.22%)