Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/F648_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  68,293,643
 Normal Paired: 31,745,090 (46.48%)
 Chimeric Paired: 26,076,626 (38.18%)
 Chimeric Ambiguous: 10,335,299 (15.13%)
 Unmapped: 136,628 (0.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 57,821,716 (84.67%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-04T04:14:06,684]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 56,103,185 (82.15%)
PCR Duplicates: 1,718,531 (2.52%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 953,364,174
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,302,755 (10.69% / 13.02%)
Hi-C Contacts: 48,800,430 (71.46% / 86.98%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 52%
 Cis/all (FF and RR orient): 64.9%
Inter-chromosomal: 8,271,546  (12.11% / 14.74%)
Intra-chromosomal: 40,528,884  (59.35% / 72.24%)
Short Range (<20,000bp): 30,972,625  (45.35% / 55.21%)
Long Range (>20,000bp): 9,556,259  (13.99% / 17.03%)