Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F149_22 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  57,471,305
 Normal Paired: 28,257,054 (49.17%)
 Chimeric Paired: 20,854,774 (36.29%)
 Chimeric Ambiguous: 8,176,949 (14.23%)
 Unmapped: 182,528 (0.32%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 49,111,828 (85.45%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-09T07:16:24,902]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 46,179,303 (80.35%)
PCR Duplicates: 2,932,525 (5.10%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 394,705,925
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,651,246 (11.57% / 14.40%)
Hi-C Contacts: 39,528,057 (68.78% / 85.60%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 59%
 Cis/all (FF and RR orient): 57.0%
Inter-chromosomal: 7,015,312  (12.21% / 15.19%)
Intra-chromosomal: 32,512,745  (56.57% / 70.41%)
Short Range (<20,000bp): 26,826,740  (46.68% / 58.09%)
Long Range (>20,000bp): 5,686,005  (9.89% / 12.31%)