Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F1613_19 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  70,433,998
 Normal Paired: 45,076,883 (64.00%)
 Chimeric Paired: 19,778,467 (28.08%)
 Chimeric Ambiguous: 5,415,635 (7.69%)
 Unmapped: 163,013 (0.23%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 64,855,350 (92.08%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-09T11:35:44,354]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 60,809,689 (86.34%)
PCR Duplicates: 4,045,661 (5.74%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 497,991,903
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,232,961 (10.27% / 11.89%)
Hi-C Contacts: 53,576,728 (76.07% / 88.11%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 69%
 Cis/all (FF and RR orient): 59.2%
Inter-chromosomal: 6,722,175  (9.54% / 11.05%)
Intra-chromosomal: 46,854,553  (66.52% / 77.05%)
Short Range (<20,000bp): 41,014,914  (58.23% / 67.45%)
Long Range (>20,000bp): 5,839,639  (8.29% / 9.60%)