Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F1741_18 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  32,241,526
 Normal Paired: 15,213,147 (47.18%)
 Chimeric Paired: 12,491,521 (38.74%)
 Chimeric Ambiguous: 4,112,492 (12.76%)
 Unmapped: 424,366 (1.32%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 27,704,668 (85.93%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-05T15:05:51,877]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 23,334,084 (72.37%)
PCR Duplicates: 4,370,584 (13.56%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 78,307,911
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,337,731 (7.25% / 10.02%)
Hi-C Contacts: 20,996,353 (65.12% / 89.98%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 73% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 56%
 Cis/all (FF and RR orient): 69.4%
Inter-chromosomal: 2,853,596  (8.85% / 12.23%)
Intra-chromosomal: 18,142,757  (56.27% / 77.75%)
Short Range (<20,000bp): 14,396,844  (44.65% / 61.70%)
Long Range (>20,000bp): 3,745,913  (11.62% / 16.05%)