Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F1925_13 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  51,717,971
 Normal Paired: 29,209,453 (56.48%)
 Chimeric Paired: 15,589,219 (30.14%)
 Chimeric Ambiguous: 6,446,883 (12.47%)
 Unmapped: 472,416 (0.91%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 44,798,672 (86.62%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-05T10:07:00,041]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 42,026,400 (81.26%)
PCR Duplicates: 2,772,272 (5.36%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 346,871,013
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,608,274 (8.91% / 10.97%)
Hi-C Contacts: 37,418,126 (72.35% / 89.03%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 66%
 Cis/all (FF and RR orient): 47.6%
Inter-chromosomal: 6,722,503  (13.00% / 16.00%)
Intra-chromosomal: 30,695,623  (59.35% / 73.04%)
Short Range (<20,000bp): 26,706,196  (51.64% / 63.55%)
Long Range (>20,000bp): 3,989,427  (7.71% / 9.49%)