Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1767_23 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  79,369,871
 Normal Paired: 38,310,126 (48.27%)
 Chimeric Paired: 30,717,543 (38.70%)
 Chimeric Ambiguous: 10,205,504 (12.86%)
 Unmapped: 136,698 (0.17%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 69,027,669 (86.97%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-05T17:28:27,641]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 67,560,946 (85.12%)
PCR Duplicates: 1,466,723 (1.85%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,601,216,110
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 8,759,067 (11.04% / 12.96%)
Hi-C Contacts: 58,801,879 (74.09% / 87.04%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 74% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 53%
 Cis/all (FF and RR orient): 60.1%
Inter-chromosomal: 11,128,310  (14.02% / 16.47%)
Intra-chromosomal: 47,673,569  (60.07% / 70.56%)
Short Range (<20,000bp): 36,813,794  (46.38% / 54.49%)
Long Range (>20,000bp): 10,859,775  (13.68% / 16.07%)