Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F21_14 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  36,340,563
 Normal Paired: 20,378,357 (56.08%)
 Chimeric Paired: 11,721,392 (32.25%)
 Chimeric Ambiguous: 4,081,337 (11.23%)
 Unmapped: 159,477 (0.44%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 32,099,749 (88.33%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-05T18:44:19,338]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 29,186,527 (80.31%)
PCR Duplicates: 2,913,222 (8.02%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 165,977,710
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,432,058 (12.20% / 15.19%)
Hi-C Contacts: 24,754,469 (68.12% / 84.81%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 65%
 Cis/all (FF and RR orient): 60.6%
Inter-chromosomal: 3,383,963  (9.31% / 11.59%)
Intra-chromosomal: 21,370,506  (58.81% / 73.22%)
Short Range (<20,000bp): 18,582,922  (51.14% / 63.67%)
Long Range (>20,000bp): 2,787,584  (7.67% / 9.55%)