Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1741_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  71,075,563
 Normal Paired: 30,480,767 (42.89%)
 Chimeric Paired: 30,366,451 (42.72%)
 Chimeric Ambiguous: 10,107,623 (14.22%)
 Unmapped: 120,722 (0.17%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 60,847,218 (85.61%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-04T22:04:19,538]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 58,960,618 (82.95%)
PCR Duplicates: 1,886,600 (2.65%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 960,842,842
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,584,851 (10.67% / 12.86%)
Hi-C Contacts: 51,375,767 (72.28% / 87.14%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 66% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 47%
 Cis/all (FF and RR orient): 72.7%
Inter-chromosomal: 7,475,464  (10.52% / 12.68%)
Intra-chromosomal: 43,900,303  (61.77% / 74.46%)
Short Range (<20,000bp): 31,117,670  (43.78% / 52.78%)
Long Range (>20,000bp): 12,782,633  (17.98% / 21.68%)