Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F225_14 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  17,466,043
 Normal Paired: 7,393,292 (42.33%)
 Chimeric Paired: 6,263,395 (35.86%)
 Chimeric Ambiguous: 1,914,373 (10.96%)
 Unmapped: 1,894,983 (10.85%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 13,656,687 (78.19%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-04T23:41:32,392]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 11,366,162 (65.08%)
PCR Duplicates: 2,290,525 (13.11%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 36,019,986
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,181,768 (12.49% / 19.20%)
Hi-C Contacts: 9,184,394 (52.58% / 80.80%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 57%
 Cis/all (FF and RR orient): 83.6%
Inter-chromosomal: 643,419  (3.68% / 5.66%)
Intra-chromosomal: 8,540,975  (48.90% / 75.14%)
Short Range (<20,000bp): 6,877,636  (39.38% / 60.51%)
Long Range (>20,000bp): 1,663,339  (9.52% / 14.63%)