Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F291_21 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  86,251,155
 Normal Paired: 44,993,412 (52.17%)
 Chimeric Paired: 30,295,971 (35.13%)
 Chimeric Ambiguous: 10,709,045 (12.42%)
 Unmapped: 252,727 (0.29%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 75,289,383 (87.29%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-05T11:14:06,729]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 70,171,080 (81.36%)
PCR Duplicates: 5,118,303 (5.93%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 528,355,517
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,088,998 (7.06% / 8.68%)
Hi-C Contacts: 64,082,082 (74.30% / 91.32%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 59%
 Cis/all (FF and RR orient): 63.8%
Inter-chromosomal: 9,564,509  (11.09% / 13.63%)
Intra-chromosomal: 54,517,573  (63.21% / 77.69%)
Short Range (<20,000bp): 44,832,979  (51.98% / 63.89%)
Long Range (>20,000bp): 9,684,594  (11.23% / 13.80%)