Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F296_15 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  36,286,845
 Normal Paired: 20,593,499 (56.75%)
 Chimeric Paired: 11,110,552 (30.62%)
 Chimeric Ambiguous: 4,279,738 (11.79%)
 Unmapped: 303,056 (0.84%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 31,704,051 (87.37%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-06T08:45:48,550]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 29,331,841 (80.83%)
PCR Duplicates: 2,372,210 (6.54%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 201,153,398
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,980,980 (13.73% / 16.98%)
Hi-C Contacts: 24,350,861 (67.11% / 83.02%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 67%
 Cis/all (FF and RR orient): 51.1%
Inter-chromosomal: 3,938,229  (10.85% / 13.43%)
Intra-chromosomal: 20,412,632  (56.25% / 69.59%)
Short Range (<20,000bp): 17,752,951  (48.92% / 60.52%)
Long Range (>20,000bp): 2,659,681  (7.33% / 9.07%)