Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2024-01-18_BGI/FFPE/F639 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  162,425
 Normal Paired: 113,741 (70.03%)
 Chimeric Paired: 38,906 (23.95%)
 Chimeric Ambiguous: 8,753 (5.39%)
 Unmapped: 1,025 (0.63%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 152,647 (93.98%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-01-23T13:19:17,253]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 151,567 (93.32%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,080 (0.66%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 13,298 (8.19% / 8.77%)
Hi-C Contacts: 138,269 (85.13% / 91.23%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 86% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 26% - 25% - 24%
 DE: 75%
 Cis/all (FF and RR orient): 71.6%
Inter-chromosomal: 10,066  (6.20% / 6.64%)
Intra-chromosomal: 128,203  (78.93% / 84.59%)
Short Range (<20,000bp): 115,322  (71.00% / 76.09%)
Long Range (>20,000bp): 12,881  (7.93% / 8.50%)