Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F639 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  35,951,559
 Normal Paired: 24,596,308 (68.42%)
 Chimeric Paired: 8,890,250 (24.73%)
 Chimeric Ambiguous: 2,275,383 (6.33%)
 Unmapped: 189,618 (0.53%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 33,486,558 (93.14%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-09T15:12:04,512]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 30,177,926 (83.94%)
PCR Duplicates: 3,308,632 (9.20%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 158,101,814
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,557,783 (7.11% / 8.48%)
Hi-C Contacts: 27,620,143 (76.83% / 91.52%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 86% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 74%
 Cis/all (FF and RR orient): 65.3%
Inter-chromosomal: 2,494,067  (6.94% / 8.26%)
Intra-chromosomal: 25,126,076  (69.89% / 83.26%)
Short Range (<20,000bp): 22,688,521  (63.11% / 75.18%)
Long Range (>20,000bp): 2,437,555  (6.78% / 8.08%)