Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2024-01-18_BGI/FFPE/F639_2 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  197,100
 Normal Paired: 148,212 (75.20%)
 Chimeric Paired: 38,390 (19.48%)
 Chimeric Ambiguous: 8,501 (4.31%)
 Unmapped: 1,997 (1.01%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 186,602 (94.67%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-01-23T13:20:31,251]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 185,090 (93.91%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,512 (0.77%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 31,606 (16.04% / 17.08%)
Hi-C Contacts: 153,484 (77.87% / 82.92%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 25%
 DE: 81%
 Cis/all (FF and RR orient): 76.5%
Inter-chromosomal: 6,951  (3.53% / 3.76%)
Intra-chromosomal: 146,533  (74.34% / 79.17%)
Short Range (<20,000bp): 135,061  (68.52% / 72.97%)
Long Range (>20,000bp): 11,472  (5.82% / 6.20%)