Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/F1313_24 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  72,923,372
 Normal Paired: 31,354,729 (43.00%)
 Chimeric Paired: 30,428,754 (41.73%)
 Chimeric Ambiguous: 11,013,845 (15.10%)
 Unmapped: 126,044 (0.17%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 61,783,483 (84.72%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-04T08:58:04,793]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 60,575,026 (83.07%)
PCR Duplicates: 1,208,457 (1.66%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,558,706,545
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,853,920 (6.66% / 8.01%)
Hi-C Contacts: 55,721,106 (76.41% / 91.99%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 67% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 47%
 Cis/all (FF and RR orient): 69.0%
Inter-chromosomal: 9,137,610  (12.53% / 15.08%)
Intra-chromosomal: 46,583,496  (63.88% / 76.90%)
Short Range (<20,000bp): 34,114,067  (46.78% / 56.32%)
Long Range (>20,000bp): 12,469,429  (17.10% / 20.59%)