Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2024-01-18_BGI/FFPE/F719 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  110,318
 Normal Paired: 64,772 (58.71%)
 Chimeric Paired: 34,225 (31.02%)
 Chimeric Ambiguous: 10,734 (9.73%)
 Unmapped: 587 (0.53%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 98,997 (89.74%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-01-23T13:21:37,717]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 98,226 (89.04%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 771 (0.70%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 10,005 (9.07% / 10.19%)
Hi-C Contacts: 88,221 (79.97% / 89.81%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 65%
 Cis/all (FF and RR orient): 55.1%
Inter-chromosomal: 13,787  (12.50% / 14.04%)
Intra-chromosomal: 74,434  (67.47% / 75.78%)
Short Range (<20,000bp): 65,834  (59.68% / 67.02%)
Long Range (>20,000bp): 8,600  (7.80% / 8.76%)