Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2024-01-18_BGI/FFPE/F719 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  110,318
 Normal Paired: 64,772 (58.71%)
 Chimeric Paired: 34,225 (31.02%)
 Chimeric Ambiguous: 10,734 (9.73%)
 Unmapped: 587 (0.53%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 98,997 (89.74%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-01-23T13:21:37,717]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 98,226 (89.04%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 771 (0.70%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 16,575 (15.02% / 16.87%)
Hi-C Contacts: 81,651 (74.01% / 83.13%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 84% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 67%
 Cis/all (FF and RR orient): 56.0%
Inter-chromosomal: 12,022  (10.90% / 12.24%)
Intra-chromosomal: 69,629  (63.12% / 70.89%)
Short Range (<20,000bp): 61,942  (56.15% / 63.06%)
Long Range (>20,000bp): 7,687  (6.97% / 7.83%)