Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F719 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  73,926,625
 Normal Paired: 39,634,367 (53.61%)
 Chimeric Paired: 25,187,531 (34.07%)
 Chimeric Ambiguous: 8,842,398 (11.96%)
 Unmapped: 262,329 (0.35%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 64,821,898 (87.68%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-10T03:09:42,884]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 61,263,095 (82.87%)
PCR Duplicates: 3,558,803 (4.81%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 568,538,945
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,499,385 (7.44% / 8.98%)
Hi-C Contacts: 55,763,710 (75.43% / 91.02%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 52.2%
Inter-chromosomal: 10,393,908  (14.06% / 16.97%)
Intra-chromosomal: 45,369,802  (61.37% / 74.06%)
Short Range (<20,000bp): 39,559,846  (53.51% / 64.57%)
Long Range (>20,000bp): 5,809,956  (7.86% / 9.48%)