Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F752_17 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  46,651,245
 Normal Paired: 33,154,797 (71.07%)
 Chimeric Paired: 9,515,550 (20.40%)
 Chimeric Ambiguous: 1,974,373 (4.23%)
 Unmapped: 2,006,525 (4.30%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 42,670,347 (91.47%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-04T16:32:24,397]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 36,455,374 (78.14%)
PCR Duplicates: 6,214,973 (13.32%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 131,883,143
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,939,569 (6.30% / 8.06%)
Hi-C Contacts: 33,515,805 (71.84% / 91.94%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 79%
 Cis/all (FF and RR orient): 72.2%
Inter-chromosomal: 1,997,305  (4.28% / 5.48%)
Intra-chromosomal: 31,518,500  (67.56% / 86.46%)
Short Range (<20,000bp): 29,021,440  (62.21% / 79.61%)
Long Range (>20,000bp): 2,497,060  (5.35% / 6.85%)