Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/F757_18 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  181,337,753
 Normal Paired: 93,298,117 (51.45%)
 Chimeric Paired: 68,255,617 (37.64%)
 Chimeric Ambiguous: 19,190,280 (10.58%)
 Unmapped: 593,739 (0.33%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 161,553,734 (89.09%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-06T20:58:41,782]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 143,265,935 (79.01%)
PCR Duplicates: 18,287,799 (10.08%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 658,646,203
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 18,986,918 (10.47% / 13.25%)
Hi-C Contacts: 124,279,017 (68.53% / 86.75%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 82% - 5% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 59%
 Cis/all (FF and RR orient): 50.1%
Inter-chromosomal: 25,182,553  (13.89% / 17.58%)
Intra-chromosomal: 99,096,464  (54.65% / 69.17%)
Short Range (<20,000bp): 92,481,845  (51.00% / 64.55%)
Long Range (>20,000bp): 6,614,619  (3.65% / 4.62%)