Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1603_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  63,743,357
 Normal Paired: 34,309,984 (53.83%)
 Chimeric Paired: 22,908,177 (35.94%)
 Chimeric Ambiguous: 6,411,834 (10.06%)
 Unmapped: 113,362 (0.18%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 57,218,161 (89.76%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-04T17:44:06,028]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 55,827,724 (87.58%)
PCR Duplicates: 1,390,437 (2.18%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,158,147,213
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,228,586 (6.63% / 7.57%)
Hi-C Contacts: 51,599,138 (80.95% / 92.43%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 57%
 Cis/all (FF and RR orient): 64.0%
Inter-chromosomal: 8,000,808  (12.55% / 14.33%)
Intra-chromosomal: 43,598,330  (68.40% / 78.09%)
Short Range (<20,000bp): 34,487,141  (54.10% / 61.77%)
Long Range (>20,000bp): 9,111,189  (14.29% / 16.32%)