Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1603_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  63,743,357
 Normal Paired: 34,309,984 (53.83%)
 Chimeric Paired: 22,908,177 (35.94%)
 Chimeric Ambiguous: 6,411,834 (10.06%)
 Unmapped: 113,362 (0.18%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 57,218,161 (89.76%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-04T17:44:06,028]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 55,827,724 (87.58%)
PCR Duplicates: 1,390,437 (2.18%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,158,147,213
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,715,662 (10.54% / 12.03%)
Hi-C Contacts: 49,112,062 (77.05% / 87.97%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 64.9%
Inter-chromosomal: 7,242,888  (11.36% / 12.97%)
Intra-chromosomal: 41,869,174  (65.68% / 75.00%)
Short Range (<20,000bp): 33,332,912  (52.29% / 59.71%)
Long Range (>20,000bp): 8,536,262  (13.39% / 15.29%)