Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1207_24 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  36,443,324
 Normal Paired: 17,528,093 (48.10%)
 Chimeric Paired: 13,796,566 (37.86%)
 Chimeric Ambiguous: 5,040,411 (13.83%)
 Unmapped: 78,254 (0.21%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 31,324,659 (85.95%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-03T05:17:16,252]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 30,401,979 (83.42%)
PCR Duplicates: 922,680 (2.53%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 521,236,901
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,544,045 (6.98% / 8.37%)
Hi-C Contacts: 27,857,934 (76.44% / 91.63%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 74% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 55%
 Cis/all (FF and RR orient): 66.8%
Inter-chromosomal: 4,176,390  (11.46% / 13.74%)
Intra-chromosomal: 23,681,544  (64.98% / 77.89%)
Short Range (<20,000bp): 19,064,855  (52.31% / 62.71%)
Long Range (>20,000bp): 4,616,689  (12.67% / 15.19%)