Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2024-01-18_BGI/FFPE/G1128 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  128,483
 Normal Paired: 67,660 (52.66%)
 Chimeric Paired: 45,195 (35.18%)
 Chimeric Ambiguous: 14,878 (11.58%)
 Unmapped: 750 (0.58%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 112,855 (87.84%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-01-23T13:22:39,640]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 111,978 (87.15%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 877 (0.68%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 11,791 (9.18% / 10.53%)
Hi-C Contacts: 100,187 (77.98% / 89.47%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 60%
 Cis/all (FF and RR orient): 68.1%
Inter-chromosomal: 12,919  (10.06% / 11.54%)
Intra-chromosomal: 87,268  (67.92% / 77.93%)
Short Range (<20,000bp): 71,747  (55.84% / 64.07%)
Long Range (>20,000bp): 15,521  (12.08% / 13.86%)