Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; openjdk version "17.0.8-internal" 2023-07-18; /data/nyt/MMO/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /data/nyt/Projects/Juicer-Out/2024-01-18_BGI/FFPE/G1128_2 -s none -p /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.chromsizes -z /data/nyt/Databases/T2T-CHM13v2.0/hgT2T.fa -D /data/nyt/MMO/Tools/juicer1.6_compact -t 20                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  137,935
 Normal Paired: 71,164 (51.59%)
 Chimeric Paired: 48,979 (35.51%)
 Chimeric Ambiguous: 16,955 (12.29%)
 Unmapped: 837 (0.61%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 120,143 (87.10%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-01-23T13:23:57,177]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 119,380 (86.55%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 763 (0.55%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 13,381 (9.70% / 11.21%)
Hi-C Contacts: 105,999 (76.85% / 88.79%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 24% - 25% - 25%
 DE: 59%
 Cis/all (FF and RR orient): 66.5%
Inter-chromosomal: 14,474  (10.49% / 12.12%)
Intra-chromosomal: 91,525  (66.35% / 76.67%)
Short Range (<20,000bp): 74,827  (54.25% / 62.68%)
Long Range (>20,000bp): 16,698  (12.11% / 13.99%)