Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1696_20 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  61,639,726
 Normal Paired: 25,221,492 (40.92%)
 Chimeric Paired: 23,357,904 (37.89%)
 Chimeric Ambiguous: 12,915,038 (20.95%)
 Unmapped: 145,292 (0.24%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 48,579,396 (78.81%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-02T13:39:20,954]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 47,261,601 (76.67%)
PCR Duplicates: 1,317,795 (2.14%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 879,151,712
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,027,632 (11.40% / 14.87%)
Hi-C Contacts: 40,233,969 (65.27% / 85.13%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 7% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 51%
 Cis/all (FF and RR orient): 45.0%
Inter-chromosomal: 10,932,851  (17.74% / 23.13%)
Intra-chromosomal: 29,301,118  (47.54% / 62.00%)
Short Range (<20,000bp): 22,979,903  (37.28% / 48.62%)
Long Range (>20,000bp): 6,321,215  (10.26% / 13.37%)