Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G2061_20 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  43,348,549
 Normal Paired: 20,464,429 (47.21%)
 Chimeric Paired: 14,809,557 (34.16%)
 Chimeric Ambiguous: 7,969,770 (18.39%)
 Unmapped: 104,793 (0.24%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 35,273,986 (81.37%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-03T00:28:16,868]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 33,734,753 (77.82%)
PCR Duplicates: 1,539,233 (3.55%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 392,334,344
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,531,102 (12.76% / 16.40%)
Hi-C Contacts: 28,203,651 (65.06% / 83.60%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 3% - 90% - 3% - 3%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 59%
 Cis/all (FF and RR orient): 22.8%
Inter-chromosomal: 8,988,654  (20.74% / 26.65%)
Intra-chromosomal: 19,214,997  (44.33% / 56.96%)
Short Range (<20,000bp): 17,524,534  (40.43% / 51.95%)
Long Range (>20,000bp): 1,690,463  (3.90% / 5.01%)