Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1663_21 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98 Sequenced Read Pairs: 49,312,141 Normal Paired: 27,109,104 (54.97%) Chimeric Paired: 16,663,309 (33.79%) Chimeric Ambiguous: 5,441,585 (11.03%) Unmapped: 98,143 (0.20%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 43,772,413 (88.77%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2025-04-02T17:39:18,483] [Globals.java:138] [main] Development mode is enabled Unique Reads: 43,049,965 (87.30%) PCR Duplicates: 722,448 (1.47%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 1,311,432,405 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 3,394,142 (6.88% / 7.88%) Hi-C Contacts: 39,655,823 (80.42% / 92.12%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 7% - 78% - 7% - 7% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 59% Cis/all (FF and RR orient): 60.5% Inter-chromosomal: 6,363,005 (12.90% / 14.78%) Intra-chromosomal: 33,292,818 (67.51% / 77.34%) Short Range (<20,000bp): 27,024,088 (54.80% / 62.77%) Long Range (>20,000bp): 6,268,730 (12.71% / 14.56%)