Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1663_21 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  49,312,141
 Normal Paired: 27,109,104 (54.97%)
 Chimeric Paired: 16,663,309 (33.79%)
 Chimeric Ambiguous: 5,441,585 (11.03%)
 Unmapped: 98,143 (0.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 43,772,413 (88.77%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-02T17:39:18,483]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 43,049,965 (87.30%)
PCR Duplicates: 722,448 (1.47%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,311,432,405
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,461,854 (11.08% / 12.69%)
Hi-C Contacts: 37,588,111 (76.22% / 87.31%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 60%
 Cis/all (FF and RR orient): 61.3%
Inter-chromosomal: 5,741,852  (11.64% / 13.34%)
Intra-chromosomal: 31,846,259  (64.58% / 73.98%)
Short Range (<20,000bp): 26,022,490  (52.77% / 60.45%)
Long Range (>20,000bp): 5,823,769  (11.81% / 13.53%)