Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1084_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98 Sequenced Read Pairs: 69,930,989 Normal Paired: 40,000,602 (57.20%) Chimeric Paired: 23,746,285 (33.96%) Chimeric Ambiguous: 6,066,993 (8.68%) Unmapped: 117,109 (0.17%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 63,746,887 (91.16%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2025-04-05T07:52:41,403] [Globals.java:138] [main] Development mode is enabled Unique Reads: 62,352,234 (89.16%) PCR Duplicates: 1,394,653 (1.99%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 1,435,545,998 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 4,574,189 (6.54% / 7.34%) Hi-C Contacts: 57,778,045 (82.62% / 92.66%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 8% - 75% - 8% - 8% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 58% Cis/all (FF and RR orient): 67.5% Inter-chromosomal: 7,895,100 (11.29% / 12.66%) Intra-chromosomal: 49,882,945 (71.33% / 80.00%) Short Range (<20,000bp): 39,030,807 (55.81% / 62.60%) Long Range (>20,000bp): 10,852,138 (15.52% / 17.40%)