Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1084_22 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  69,930,989
 Normal Paired: 40,000,602 (57.20%)
 Chimeric Paired: 23,746,285 (33.96%)
 Chimeric Ambiguous: 6,066,993 (8.68%)
 Unmapped: 117,109 (0.17%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 63,746,887 (91.16%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-05T07:52:41,403]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 62,352,234 (89.16%)
PCR Duplicates: 1,394,653 (1.99%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,435,545,998
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,190,401 (10.28% / 11.53%)
Hi-C Contacts: 55,161,833 (78.88% / 88.47%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 59%
 Cis/all (FF and RR orient): 68.3%
Inter-chromosomal: 7,170,296  (10.25% / 11.50%)
Intra-chromosomal: 47,991,537  (68.63% / 76.97%)
Short Range (<20,000bp): 37,794,702  (54.05% / 60.61%)
Long Range (>20,000bp): 10,196,835  (14.58% / 16.35%)