Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G382_21 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                           
Sequenced Read Pairs:  60,138,688
 Normal Paired: 22,744,290 (37.82%)
 Chimeric Paired: 26,150,823 (43.48%)
 Chimeric Ambiguous: 11,135,385 (18.52%)
 Unmapped: 108,190 (0.18%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 48,895,113 (81.30%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-04T13:35:29,023]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 47,919,901 (79.68%)
PCR Duplicates: 975,212 (1.62%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,209,396,793
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,152,721 (6.91% / 8.67%)
Hi-C Contacts: 43,767,180 (72.78% / 91.33%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 65% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 44%
 Cis/all (FF and RR orient): 69.9%
Inter-chromosomal: 7,384,960  (12.28% / 15.41%)
Intra-chromosomal: 36,382,220  (60.50% / 75.92%)
Short Range (<20,000bp): 25,731,767  (42.79% / 53.70%)
Long Range (>20,000bp): 10,650,453  (17.71% / 22.23%)