Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G1228 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  46,784,145
 Normal Paired: 23,173,260 (49.53%)
 Chimeric Paired: 16,938,650 (36.21%)
 Chimeric Ambiguous: 6,443,391 (13.77%)
 Unmapped: 228,844 (0.49%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 40,111,910 (85.74%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-10T02:28:13,784]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 37,374,875 (79.89%)
PCR Duplicates: 2,737,035 (5.85%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 280,396,378
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,706,711 (7.92% / 9.92%)
Hi-C Contacts: 33,668,164 (71.96% / 90.08%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 66.6%
Inter-chromosomal: 4,755,229  (10.16% / 12.72%)
Intra-chromosomal: 28,912,935  (61.80% / 77.36%)
Short Range (<20,000bp): 23,519,755  (50.27% / 62.93%)
Long Range (>20,000bp): 5,393,180  (11.53% / 14.43%)