Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G1233_18 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  74,741,511
 Normal Paired: 45,007,649 (60.22%)
 Chimeric Paired: 21,795,397 (29.16%)
 Chimeric Ambiguous: 7,801,407 (10.44%)
 Unmapped: 137,058 (0.18%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 66,803,046 (89.38%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-09T07:35:53,581]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 61,174,132 (81.85%)
PCR Duplicates: 5,628,914 (7.53%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 373,808,607
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 8,112,861 (10.85% / 13.26%)
Hi-C Contacts: 53,061,271 (70.99% / 86.74%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 67%
 Cis/all (FF and RR orient): 40.4%
Inter-chromosomal: 10,409,013  (13.93% / 17.02%)
Intra-chromosomal: 42,652,258  (57.07% / 69.72%)
Short Range (<20,000bp): 37,512,702  (50.19% / 61.32%)
Long Range (>20,000bp): 5,139,556  (6.88% / 8.40%)