Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G1250_15 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  89,442,219
 Normal Paired: 54,839,638 (61.31%)
 Chimeric Paired: 26,475,461 (29.60%)
 Chimeric Ambiguous: 7,923,336 (8.86%)
 Unmapped: 203,784 (0.23%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 81,315,099 (90.91%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-05T19:19:42,348]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 70,715,350 (79.06%)
PCR Duplicates: 10,599,749 (11.85%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 284,162,246
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 9,165,041 (10.25% / 12.96%)
Hi-C Contacts: 61,550,309 (68.82% / 87.04%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 83% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 68%
 Cis/all (FF and RR orient): 64.5%
Inter-chromosomal: 7,012,547  (7.84% / 9.92%)
Intra-chromosomal: 54,537,762  (60.98% / 77.12%)
Short Range (<20,000bp): 47,224,719  (52.80% / 66.78%)
Long Range (>20,000bp): 7,313,043  (8.18% / 10.34%)