Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 98 threads; openjdk version "17.0.8-internal" 2023-07-18; /home/torgunakov/Tools/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /beegfs/scratch/ws/ws1/torgunakov-workfeb/Juicer-Out/2025-03-28_Rogachev/G1250_15 -s none -p /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /beegfs/scratch/ws/ws1/torgunakov-workfeb/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /home/torgunakov/Tools/juicer1.6_compact -t 98                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  57,820,128
 Normal Paired: 33,917,778 (58.66%)
 Chimeric Paired: 17,991,053 (31.12%)
 Chimeric Ambiguous: 5,784,122 (10.00%)
 Unmapped: 127,175 (0.22%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 51,908,831 (89.78%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-04-01T12:00:58,384]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 45,629,839 (78.92%)
PCR Duplicates: 6,278,992 (10.86%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 196,890,548
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,827,451 (10.08% / 12.77%)
Hi-C Contacts: 39,802,388 (68.84% / 87.23%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 6% - 81% - 6% - 6%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 65%
 Cis/all (FF and RR orient): 62.7%
Inter-chromosomal: 5,122,687  (8.86% / 11.23%)
Intra-chromosomal: 34,679,701  (59.98% / 76.00%)
Short Range (<20,000bp): 29,689,278  (51.35% / 65.07%)
Long Range (>20,000bp): 4,990,423  (8.63% / 10.94%)