Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G1290_15 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  93,586,397
 Normal Paired: 46,023,278 (49.18%)
 Chimeric Paired: 33,250,090 (35.53%)
 Chimeric Ambiguous: 14,112,274 (15.08%)
 Unmapped: 200,755 (0.21%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 79,273,368 (84.71%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-09T03:59:57,278]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 74,044,536 (79.12%)
PCR Duplicates: 5,228,832 (5.59%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 574,198,896
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 9,843,923 (10.52% / 13.29%)
Hi-C Contacts: 64,200,613 (68.60% / 86.71%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 50.6%
Inter-chromosomal: 13,311,032  (14.22% / 17.98%)
Intra-chromosomal: 50,889,581  (54.38% / 68.73%)
Short Range (<20,000bp): 41,886,109  (44.76% / 56.57%)
Long Range (>20,000bp): 9,003,472  (9.62% / 12.16%)