Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 22 threads; openjdk version "17.0.8-internal" 2023-07-18; /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact/scripts/juicer.sh -g hg38 -d /mnt/scratch/ws/nytorgunakov/202410241401workdec/Juicer-Out/2024-08-28_Rogachev/G1359_20 -s none -p /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta.chromsizes -z /mnt/storage/home/nytorgunakov/Databases/hg38_canonical/GRCh38_no_alt_analysis_set_GCA_000001405.15.canonical.fasta -D /mnt/storage/home/nytorgunakov/soft/juicer1.6_compact -t 22                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  36,010,959
 Normal Paired: 22,066,985 (61.28%)
 Chimeric Paired: 10,477,959 (29.10%)
 Chimeric Ambiguous: 3,303,454 (9.17%)
 Unmapped: 162,561 (0.45%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 32,544,944 (90.38%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2024-09-05T23:40:46,027]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 30,991,558 (86.06%)
PCR Duplicates: 1,553,386 (4.31%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 329,987,194
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,056,475 (11.26% / 13.09%)
Hi-C Contacts: 26,935,083 (74.80% / 86.91%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 85% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 69%
 Cis/all (FF and RR orient): 56.8%
Inter-chromosomal: 3,626,367  (10.07% / 11.70%)
Intra-chromosomal: 23,308,716  (64.73% / 75.21%)
Short Range (<20,000bp): 20,771,365  (57.68% / 67.02%)
Long Range (>20,000bp): 2,537,351  (7.05% / 8.19%)